[libsbml] New port for libsbml (#13524)

Co-authored-by: JackBoosY <yuzaiyang@beyondsoft.com>

3 files changed, 154 insertions, 0 deletions

diff --git a/ports/libsbml/CONTROL b/ports/libsbml/CONTROL
new file mode 100644
index 000000000..654ea75bd
--- /dev/null
+++ b/ports/libsbml/CONTROL
@@ -0,0 +1,49 @@
+Source: libsbml

+Version: 5.18.0

+Description: A library for reading / writing SBML files

+Default-Features: expat,comp,fbc,groups,layout,render,libxml2

+Supports: !uwp

+

+Feature: test

+Description: Unit testing of libSBMLs implementation

+Build-Depends: check

+

+Feature: bzip2

+Description: bz2 compression support for libsbml

+Build-Depends: bzip2

+

+Feature: zlib

+Description: gzip compression support for libsbml

+Build-Depends: zlib

+

+Feature: expat

+Description: libsbml using expat parser

+Build-Depends: expat

+

+Feature: libxml2

+Description: libsbml using libxml2 parser

+Build-Depends: libxml2

+

+Feature: comp

+Description: support for Hierarchical Model Composition

+

+Feature: fbc

+Description: support for Flux Balance Constrant Modeling

+

+Feature: groups

+Description: support for Groups

+

+Feature: layout

+Description: support for Pathway Layouts

+

+Feature: multi

+Description: support for Multistate Modeling

+

+Feature: qual

+Description: support for Qualitative Modeling 

+

+Feature: render

+Description: support for Rendering information

+

+Feature: namespace

+Description: Build with the WITH_CPP_NAMESPACE option set to on

diff --git a/ports/libsbml/fix-linkage-type.patch b/ports/libsbml/fix-linkage-type.patch
new file mode 100644
index 000000000..08186357a
--- /dev/null
+++ b/ports/libsbml/fix-linkage-type.patch
@@ -0,0 +1,22 @@
+diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
+index eb692cf..11158db 100644
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -524,7 +524,7 @@ INSTALL(
+ endif()
+ 
+   
+-endif()
++else()
+ 
+ add_library (${LIBSBML_LIBRARY}-static STATIC ${LIBSBML_SOURCES} )
+ 
+@@ -560,7 +560,7 @@ INSTALL(FILES
+   DESTINATION ${PACKAGE_CONFIG_DIR}
+ )
+ endif()
+-
++endif()
+ ##############################################################################
+ #
+ # add native tests
diff --git a/ports/libsbml/portfile.cmake b/ports/libsbml/portfile.cmake
new file mode 100644
index 000000000..ed7749daa
--- /dev/null
+++ b/ports/libsbml/portfile.cmake
@@ -0,0 +1,83 @@
+vcpkg_download_distfile(ARCHIVE

+    URLS "https://sourceforge.net/projects/sbml/files/libsbml/5.18.0/stable/libSBML-5.18.0-core-plus-packages-src.tar.gz/download"

+    FILENAME "libSBML-5.18.0.zip"

+    SHA512 49dedaa2fcd2077e7389a8f940adf931d80aa7a8f9d57330328372d2ac8ebcaeb03a20524df2fe0f1c6933587904613754585076c46e6cb5d6f7a001f427185b

+)

+

+vcpkg_extract_source_archive_ex(

+    OUT_SOURCE_PATH SOURCE_PATH

+    ARCHIVE ${ARCHIVE}

+    PATCHES fix-linkage-type.patch

+)

+

+string(COMPARE EQUAL "${VCPKG_CRT_LINKAGE}" "static" STATIC_RUNTIME)

+string(COMPARE EQUAL "${VCPKG_LIBRARY_LINKAGE}" "static" STATIC_LIBRARY)

+

+vcpkg_check_features(OUT_FEATURE_OPTIONS FEATURE_OPTIONS

+    comp        ENABLE_COMP

+    fbc         ENABLE_FBC

+    groups      ENABLE_GROUPS

+    layout      ENABLE_LAYOUT

+    multi       ENABLE_MULTI

+    qual        ENABLE_QUAL

+    render      ENABLE_RENDER

+    render      ENABLE_LAYOUT

+    bzip2       WITH_BZIP2

+    zlib        WITH_ZLIB

+    test        WITH_CHECK

+    namespace   WITH_CPP_NAMESPACE

+)

+

+# Handle conflict features

+set(WITH_EXPAT OFF)

+if ("expat" IN_LIST FEATURES)

+    set(WITH_EXPAT ON)

+endif()

+

+set(WITH_LIBXML OFF)

+if ("libxml2" IN_LIST FEATURES)

+    set(WITH_LIBXML ON)

+endif()

+

+if (WITH_EXPAT AND WITH_LIBXML)

+    message("Feature expat conflict with feature libxml2, currently using libxml2...")

+    set(WITH_EXPAT OFF)

+endif()

+

+if ("test" IN_LIST FEATURES AND WIN32)

+    message(FATAL_ERROR "Feature test only support UNIX.")

+endif()

+

+vcpkg_configure_cmake(

+    SOURCE_PATH ${SOURCE_PATH}

+    PREFER_NINJA # Disable this option if project cannot be built with Ninja

+    OPTIONS ${FEATURE_OPTIONS}

+        -DWITH_EXPAT=${WITH_EXPAT}

+        -DWITH_LIBXML=${WITH_LIBXML}

+        -DENABLE_L3V2EXTENDEDMATH:BOOL=ON

+        -DWITH_STATIC_RUNTIME=${STATIC_RUNTIME}

+        -DLIBSBML_SKIP_SHARED_LIBRARY=${STATIC_LIBRARY}

+)

+

+vcpkg_install_cmake()

+

+vcpkg_fixup_cmake_targets(CONFIG_PATH lib/cmake)

+

+vcpkg_copy_pdbs()

+

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include)

+

+file(GLOB TXT_FILES ${CURRENT_PACKAGES_DIR}/debug/*.txt)

+if (TXT_FILES)

+    file(REMOVE ${TXT_FILES})

+endif()

+file(GLOB TXT_FILES ${CURRENT_PACKAGES_DIR}/*.txt)

+if (TXT_FILES)

+    file(REMOVE ${TXT_FILES})

+endif()

+

+if (EXISTS ${CURRENT_PACKAGES_DIR}/debug/share)

+    file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/share)

+endif()

+

+file(INSTALL ${SOURCE_PATH}/LICENSE.txt DESTINATION ${CURRENT_PACKAGES_DIR}/share/${PORT} RENAME copyright)
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