[many ports] improvements for linux/wsl (#6730)

* [many ports] improve compatibility with WSL and mixed case filesystems

* [treehopper] express dependency on libusb, which was not working on non-win32 platforms and is still broken there

* [libharu] add compatibility with non-win32 platforms

* [geogram] fix openblas on linux
[clapack] better integration with linux environment
[visit-struct] put cmake config file in the expected folder
[geogram] remove trailing underscore to enable compatibility with OpenBLAS

* [openblas] playing with underscore, without success

* [openblas/lapack] fix library integration

* [clapack] improve target handling in cmake module

* [openblas] promote self-generated config to default cmake module, otherwise internal ones thinks wrongly that openblas can also solve lapack libs

* [clapack,openblas] improve libraries integration

* [many ports] fix cmake unnecessary target paths, wrong config paths, empty default dependencies, unnecessary [core] tags

* [suitesparse] improve integration with new lapack/openblas mechanism

* [suitesparse] add no underscore postfix also for linux

* [ceres] fix integration with newer openblas/lapack configs

* [aws-c-event-stream] fix regression

* [systemc] fix regression

* [libwebp,geogram] trigger rebuild

* [libwebp,pthread4w] fix regressions

* [glbinding] fix cmake module installation

* [globjects] disentangle unnecessary dependency from qt5

* [jasper] remove broken and unnecessary patches

* [libwebp] fix regression

* [many ports] avoid using BUILD_SHARED_LIBS which is uninitialized in port files

* [clapack] correctly find dlls

* [clapack] use a generic blas as dependency

* [fizz,g2o] restore expected version

* fix mistake

* [many ports] remove WIN32, APPLE and UNIX (again, they keep creeping in) from ports since they are broken and usually break non-win32 ports

* [libressl,openssl] do not try to build one if the other is already installed

* [itk] update ref and patch to avoid regression

* [libressl,openssl] implement full strategy to fix CI

* [libwebp] disable components that are broken on macOS

* [ogre] enable macOS build

* [freeimage,jxrlib,ogre,openexr,protobuf] port patches from #5169

* [ogre] add missing install command

* [ffmpeg] enable wrapper for cmake module

* [ffmpeg] add avresample module finder

* [ffmpeg] improve module detection and exported symbols

* [ffmpeg] add variables to cache

* [thrift] remove unnecessary build option

* [allegro5] fix shared/static inversion

* [protobuf] cleanup

* [libressl] cleanup

* [moos-core] cleanup

* commented features must not be separated from other features, otherwise vcpkg complains

* [itk] fix regression

* [shogun,itk] fix regressions

* [ogre] fix regression

* [opusfile] add compatibility with non-win32

* [itk] fix regression

* [sndfile,libsndfile] remove duplicate, redirect sndfile to libsndfile

* add missing dependencies

* [ismrmrd] fix regression

* [ffmpeg] trigger rebuild

* [clapack,openblas,libogg] fix regressions on macOS

* [libtins] fix regression

* force rebuild windows regressions, unable to reproduce locally

* [mosquitto] enable non-win32 builds

* [json-dto] force rebuild, unable to reproduce regression locally

* [many ports] uniform naming and path length requests

* fix regression

* fix regression

* [ffmpeg] fixes for downstream projects

* clean up - thanks to reviewers

* trigger rebuild of regressions on macOS

* trigger rebuild of regressions on macOS - part2

* Add core back

* Use VCPKG_CONCURRENCY

* Add core back to suitesparse

* Add core back to curl

* Add core back to magnum

* Add core back to magnum

* Add core back to magnum

* Add core back to cgal

3 files changed, 43 insertions, 22 deletions

diff --git a/ports/ismrmrd/CONTROL b/ports/ismrmrd/CONTROL
index 7f7c26ef7..f876416d4 100644
--- a/ports/ismrmrd/CONTROL
+++ b/ports/ismrmrd/CONTROL
@@ -1,4 +1,4 @@
 Source: ismrmrd

-Version: 1.4.0
+Version: 1.4.0-1

 Description: ISMRM Raw Data Format

-Build-Depends: pugixml, hdf5

+Build-Depends: pugixml, hdf5, boost, fftw3

diff --git a/ports/ismrmrd/fix_static.patch b/ports/ismrmrd/fix_static.patch
new file mode 100644
index 000000000..e9bd5f360
--- /dev/null
+++ b/ports/ismrmrd/fix_static.patch
@@ -0,0 +1,9 @@
+diff --git a/tests/test_main.cpp b/tests/test_main.cpp
+index 4b1809d..7ec1414 100644
+--- a/tests/test_main.cpp
++++ b/tests/test_main.cpp
+@@ -1,4 +1,3 @@
+-#define BOOST_TEST_DYN_LINK
+ #define BOOST_TEST_MODULE "ISMRMRD Unit Tests"
+ #include <boost/test/unit_test.hpp>
+ 
diff --git a/ports/ismrmrd/portfile.cmake b/ports/ismrmrd/portfile.cmake
index 7427cb1b2..4b6f7e6d6 100644
--- a/ports/ismrmrd/portfile.cmake
+++ b/ports/ismrmrd/portfile.cmake
@@ -1,34 +1,34 @@
 include(vcpkg_common_functions)

 

-vcpkg_check_linkage(ONLY_DYNAMIC_LIBRARY ONLY_DYNAMIC_CRT)

-

 if (VCPKG_TARGET_ARCHITECTURE MATCHES "x86")

-    set(WIN32_INCLUDE_STDDEF "x86-windows-include-stddef.patch")

+    set(WIN32_INCLUDE_STDDEF_PATCH "x86-windows-include-stddef.patch")

+endif()

+

+if(VCPKG_LIBRARY_LINKAGE STREQUAL static)

+    set(STATIC_PATCH "fix_static.patch")

 endif()

 

 vcpkg_from_github(

     OUT_SOURCE_PATH SOURCE_PATH

     REPO ismrmrd/ismrmrd

-    REF 4d4004d91ccadd41ddb30b019f970a69bb23a1bc
-    SHA512 648901de4629c8b11574894763a5fa61a3cb0420c5aa62cdff02c4641ba702ca73efba12b403076301e44a4f0a7c915da1f2c7a34b24377d0385af92f2eda892 

+    REF 4d4004d91ccadd41ddb30b019f970a69bb23a1bc

+    SHA512 648901de4629c8b11574894763a5fa61a3cb0420c5aa62cdff02c4641ba702ca73efba12b403076301e44a4f0a7c915da1f2c7a34b24377d0385af92f2eda892

     HEAD_REF master

     PATCHES

-        ${WIN32_INCLUDE_STDDEF}

+        ${STATIC_PATCH}

+        ${WIN32_INCLUDE_STDDEF_PATCH}

 )

 

-

-

 vcpkg_configure_cmake(

     SOURCE_PATH ${SOURCE_PATH}

     PREFER_NINJA

-    OPTIONS 

-		-DUSE_SYSTEM_PUGIXML=ON

-		-DUSE_HDF5_DATASET_SUPPORT=ON

+    OPTIONS

+        -DUSE_SYSTEM_PUGIXML=ON

+        -DUSE_HDF5_DATASET_SUPPORT=ON

 )

 

 vcpkg_install_cmake()

 vcpkg_copy_pdbs()

-

 vcpkg_fixup_cmake_targets(CONFIG_PATH share/ismrmrd/cmake)

 

 if(EXISTS ${CURRENT_PACKAGES_DIR}/lib/ismrmrd.dll)

@@ -62,15 +62,27 @@ file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/share)
 file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include)

 file(REMOVE_RECURSE ${ISMRMRD_CMAKE_DIRS})

 

+if(NOT VCPKG_CMAKE_SYSTEM_NAME OR VCPKG_CMAKE_SYSTEM_NAME STREQUAL WindowsStore)

+    set(EXECUTABLE_SUFFIX ".exe")

+endif()

 

-file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin/ismrmrd_info.exe)

-file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/bin/ismrmrd_info.exe)

-

-file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin/ismrmrd_c_example.exe)

-file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/bin/ismrmrd_c_example.exe)

-

-file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin/ismrmrd_read_timing_test.exe)

-file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/bin/ismrmrd_read_timing_test.exe)

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin/ismrmrd_c_example${EXECUTABLE_SUFFIX})

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/bin/ismrmrd_c_example${EXECUTABLE_SUFFIX})

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin/ismrmrd_generate_cartesian_shepp_logan${EXECUTABLE_SUFFIX})

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/bin/ismrmrd_generate_cartesian_shepp_logan${EXECUTABLE_SUFFIX})

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin/ismrmrd_info${EXECUTABLE_SUFFIX})

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/bin/ismrmrd_info${EXECUTABLE_SUFFIX})

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin/ismrmrd_read_timing_test${EXECUTABLE_SUFFIX})

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/bin/ismrmrd_read_timing_test${EXECUTABLE_SUFFIX})

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin/ismrmrd_recon_cartesian_2d${EXECUTABLE_SUFFIX})

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/bin/ismrmrd_recon_cartesian_2d${EXECUTABLE_SUFFIX})

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin/ismrmrd_test_xml${EXECUTABLE_SUFFIX})

+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/bin/ismrmrd_test_xml${EXECUTABLE_SUFFIX})

+

+if(VCPKG_LIBRARY_LINKAGE STREQUAL static)

+    file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin/)

+    file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/bin/)

+endif()

 

 file(COPY ${SOURCE_PATH}/LICENSE DESTINATION ${CURRENT_PACKAGES_DIR}/share/ismrmrd)

 file(RENAME ${CURRENT_PACKAGES_DIR}/share/ismrmrd/LICENSE ${CURRENT_PACKAGES_DIR}/share/ismrmrd/copyright)