[ITK] Update to 5.1 (#11208)

* [vtk-m] new port vtk-m

* [VTK] Update to 9.0

* include local buildtree changes

* [pcl] disable VTK due to API changes in VTK 9.0

* [vtk-m] add supports field to be only x64

* [vtk-dicom] add python executable.

* fix vtkm dependency

* [vtk-dicom] fix missing std:: namespace

* [vtk-m] add uwp to unsupported triplets

* [vtk] add pegtl include patch, reenable IOMotionFX

* remove hdf5 changes for testing

* use different pgetl patch which redirects to the installed config of pegtl

* [pegtl-2] version file needs renaming too

* [vtk] change dependency to pgetl-2 and fix the patch

* [vtk] put in hdf5 fix again and correct manually installed include files

* remove deprecated function to retrigger CI

* [lz4] correctly lowercase the lz4 config

* [vtk] remove unnecessary code

* [pegtl-2] add homepage

* [pegtl] modernize portfiles

* [vtk-dicom] add homepage

* [vtk-dicom] modernize portfile

* [vtk-m] remove empty build depends

* [vtk] try fixing the permission issue

* [vtk] minimal dependency correction

* [itk] update

* fix portfile errors

* WIP commit

* should make ITK green in VCPKG CI but there a still issues with features

* more dependencies and features....

* remove itk from baseline failure so the check can get green

* more dependency updating.

* minor build fixes

* [openjpeg] Fix dll location

* fix other issues

* add rtkcuda

* [openjpeg] remove default features to make arm and uwp platforms happy

* [itk] more dependency fixes

* [openjpeg] fix no tools case

* [itk] fix wip patch

* [itk] split up patches & cleanup & and move rtk tools if build

* [itk] fix patch and remove old and wip patch

* [nifticlib] Add new port required by minc

* [nifticlib] change repo and add features

* [nifticilib] add zlib dependency & cleanup

* [minc] add new port

* [vcpkg/scripts] add swig to find acquire programm

* [itk/minc] update for external minc

* add supports field for nifticlib

* [itk] make python a default feature for testing

* [itk] cleanup python vars a bit
[vcpkg/scripts] correct swig hash

* [vcpkg/scripts] fix swig

* [itk] fix python include path on unix system

* [itk] remove python as a default. A bit of feature cleanup

* [itk] update remote RTK

* [itk|rtk] remove RTK module before configure to allow patching

* [opencl] update opencl wrapper

* [itk] fix opencl static linkage

* [itk] add cufftw fix

* update baseline

* [itk] fix itk[tbb]

* [itk] update python paths to 3.8

* [itk] add failure messages for unsupported architectures for some features

* [vcpkg_find_acquire_program] update swig to 4.0.2

* Update portfile.cmake

* [itk] move the module removal out of the if for people reusing the old source tree

* [itk] add missing auto_clean to vcpkg_copy_tools

* Update ports/nifticlib/CONTROL

Co-authored-by: Robert Schumacher <roschuma@microsoft.com>

* Update ports/openjpeg/portfile.cmake

Co-authored-by: Robert Schumacher <roschuma@microsoft.com>

* Update scripts/cmake/vcpkg_find_acquire_program.cmake

Co-authored-by: Robert Schumacher <roschuma@microsoft.com>

* [openjpeg] pass OPTIONS to vcpkg_configure_cmake

* [itk] fix typo and leave a todo.

* use sourceforge args for swig

* Update ports/openjpeg/CONTROL

Co-authored-by: Jack·Boos·Yu <47264268+JackBoosY@users.noreply.github.com>

* Update ports/opencl/CONTROL

Co-authored-by: Jack·Boos·Yu <47264268+JackBoosY@users.noreply.github.com>

* [itk] remove debug msgs from patch

* pre-install yasm on OSX

Co-authored-by: Lily <47812810+LilyWangL@users.noreply.github.com>
Co-authored-by: Robert Schumacher <roschuma@microsoft.com>
Co-authored-by: Jack·Boos·Yu <47264268+JackBoosY@users.noreply.github.com>
Co-authored-by: JackBoosY <yuzaiyang@beyondsoft.com>

1 files changed, 58 insertions, 0 deletions

diff --git a/ports/itk/cufftw.patch b/ports/itk/cufftw.patch
new file mode 100644
index 000000000..17365fb2f
--- /dev/null
+++ b/ports/itk/cufftw.patch
@@ -0,0 +1,58 @@
+From 0f47aae05217884193a39690c2beef566f4ed3b1 Mon Sep 17 00:00:00 2001
+From: Stephen Aylward <stephen.aylward@kitware.com>
+Date: Sat, 25 Apr 2020 20:15:21 -0400
+Subject: [PATCH] BUG: CUFFTW paths were not being set and unnecessary FFTW
+ files used
+
+FindFFTW sets the FFTW_INCLUDES variable. The FFTW_INCLUDE_PATH var is
+specific to FFTW (not used by CUFFTW).
+
+FFTWGlobalConfiguration file is only needed if FFTW is being used,
+not if CUFFT is being used.
+---
+ CMake/FindFFTW.cmake                     | 2 +-
+ Modules/Filtering/FFT/CMakeLists.txt     | 2 +-
+ Modules/Filtering/FFT/src/CMakeLists.txt | 9 +++++----
+ 3 files changed, 7 insertions(+), 6 deletions(-)
+
+diff --git a/CMake/FindFFTW.cmake b/CMake/FindFFTW.cmake
+index 785edc2b628..e1935899cab 100644
+--- a/CMake/FindFFTW.cmake
++++ b/CMake/FindFFTW.cmake
+@@ -62,7 +62,7 @@ if(ITK_USE_FFTWD OR ITK_USE_FFTWF)
+     find_path(FFTW_INCLUDE_PATH fftw3.h ${FFTW_INC_SEARCHPATH})
+   endif()
+ 
+-  if(FFTW_INCLUDE_PATH)
++  if(FFTW_INCLUDE_PATH OR CUFFTW_INCLUDE_PATH)
+     if(ITK_USE_CUFFTW)
+       file(TO_CMAKE_PATH "${CUFFTW_INCLUDE_PATH}" CUFFTW_INCLUDE_PATH)
+       set(FFTW_INCLUDE ${CUFFTW_INCLUDE_PATH})
+diff --git a/Modules/Filtering/FFT/CMakeLists.txt b/Modules/Filtering/FFT/CMakeLists.txt
+index 7d9d1900b56..713530149cb 100644
+--- a/Modules/Filtering/FFT/CMakeLists.txt
++++ b/Modules/Filtering/FFT/CMakeLists.txt
+@@ -5,5 +5,5 @@ if(ITK_USE_CUFFTW)
+ else()
+   set(ITKFFT_LIBRARIES ITKFFT)
+ endif()
+-set(ITKFFT_INCLUDE_DIRS ${FFTW_INCLUDE_PATH})
++set(ITKFFT_INCLUDE_DIRS ${FFTW_INCLUDE})
+ itk_module_impl()
+diff --git a/Modules/Filtering/FFT/src/CMakeLists.txt b/Modules/Filtering/FFT/src/CMakeLists.txt
+index 3f3137b8cd4..bde3ee906f8 100644
+--- a/Modules/Filtering/FFT/src/CMakeLists.txt
++++ b/Modules/Filtering/FFT/src/CMakeLists.txt
+@@ -1,7 +1,8 @@
+-set(ITKFFT_SRCS
+-  itkFFTWGlobalConfiguration.cxx
+-  itkComplexToComplexFFTImageFilter.cxx
+-  )
++set(ITKFFT_SRCS itkComplexToComplexFFTImageFilter.cxx)
++
++if( ITK_USE_FFTWF OR ITK_USE_FFTWD AND NOT ITK_USE_CUFFTW)
++  list(APPEND ITKFFT_SRCS itkFFTWGlobalConfiguration.cxx )
++endif()
+ 
+ itk_module_add_library(ITKFFT ${ITKFFT_SRCS})
+