[many ports] improvements for linux/wsl (#6730)

* [many ports] improve compatibility with WSL and mixed case filesystems

* [treehopper] express dependency on libusb, which was not working on non-win32 platforms and is still broken there

* [libharu] add compatibility with non-win32 platforms

* [geogram] fix openblas on linux
[clapack] better integration with linux environment
[visit-struct] put cmake config file in the expected folder
[geogram] remove trailing underscore to enable compatibility with OpenBLAS

* [openblas] playing with underscore, without success

* [openblas/lapack] fix library integration

* [clapack] improve target handling in cmake module

* [openblas] promote self-generated config to default cmake module, otherwise internal ones thinks wrongly that openblas can also solve lapack libs

* [clapack,openblas] improve libraries integration

* [many ports] fix cmake unnecessary target paths, wrong config paths, empty default dependencies, unnecessary [core] tags

* [suitesparse] improve integration with new lapack/openblas mechanism

* [suitesparse] add no underscore postfix also for linux

* [ceres] fix integration with newer openblas/lapack configs

* [aws-c-event-stream] fix regression

* [systemc] fix regression

* [libwebp,geogram] trigger rebuild

* [libwebp,pthread4w] fix regressions

* [glbinding] fix cmake module installation

* [globjects] disentangle unnecessary dependency from qt5

* [jasper] remove broken and unnecessary patches

* [libwebp] fix regression

* [many ports] avoid using BUILD_SHARED_LIBS which is uninitialized in port files

* [clapack] correctly find dlls

* [clapack] use a generic blas as dependency

* [fizz,g2o] restore expected version

* fix mistake

* [many ports] remove WIN32, APPLE and UNIX (again, they keep creeping in) from ports since they are broken and usually break non-win32 ports

* [libressl,openssl] do not try to build one if the other is already installed

* [itk] update ref and patch to avoid regression

* [libressl,openssl] implement full strategy to fix CI

* [libwebp] disable components that are broken on macOS

* [ogre] enable macOS build

* [freeimage,jxrlib,ogre,openexr,protobuf] port patches from #5169

* [ogre] add missing install command

* [ffmpeg] enable wrapper for cmake module

* [ffmpeg] add avresample module finder

* [ffmpeg] improve module detection and exported symbols

* [ffmpeg] add variables to cache

* [thrift] remove unnecessary build option

* [allegro5] fix shared/static inversion

* [protobuf] cleanup

* [libressl] cleanup

* [moos-core] cleanup

* commented features must not be separated from other features, otherwise vcpkg complains

* [itk] fix regression

* [shogun,itk] fix regressions

* [ogre] fix regression

* [opusfile] add compatibility with non-win32

* [itk] fix regression

* [sndfile,libsndfile] remove duplicate, redirect sndfile to libsndfile

* add missing dependencies

* [ismrmrd] fix regression

* [ffmpeg] trigger rebuild

* [clapack,openblas,libogg] fix regressions on macOS

* [libtins] fix regression

* force rebuild windows regressions, unable to reproduce locally

* [mosquitto] enable non-win32 builds

* [json-dto] force rebuild, unable to reproduce regression locally

* [many ports] uniform naming and path length requests

* fix regression

* fix regression

* [ffmpeg] fixes for downstream projects

* clean up - thanks to reviewers

* trigger rebuild of regressions on macOS

* trigger rebuild of regressions on macOS - part2

* Add core back

* Use VCPKG_CONCURRENCY

* Add core back to suitesparse

* Add core back to curl

* Add core back to magnum

* Add core back to magnum

* Add core back to magnum

* Add core back to cgal

5 files changed, 36 insertions, 43 deletions

diff --git a/ports/itk/CONTROL b/ports/itk/CONTROL
index b8ba70d0f..b77968554 100644
--- a/ports/itk/CONTROL
+++ b/ports/itk/CONTROL
@@ -1,5 +1,5 @@
 Source: itk
-Version: 5.0.0-1
+Version: 5.0.0-2
 Description: Insight Segmentation and Registration Toolkit (ITK) is used for image processing and analysis.
 Homepage: https://github.com/InsightSoftwareConsortium/ITK
 Build-Depends: double-conversion, libjpeg-turbo, zlib, libpng, tiff, expat, eigen3, hdf5[cpp], openjpeg
diff --git a/ports/itk/fix_conflict_with_openjp2_pc.patch b/ports/itk/fix_conflict_with_openjp2_pc.patch
deleted file mode 100644
index b1a2fb6ec..000000000
--- a/ports/itk/fix_conflict_with_openjp2_pc.patch
+++ /dev/null
@@ -1,33 +0,0 @@
-diff --git a/Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt b/Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt

-index 6ac16ab6..2bde9952 100644

---- a/Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt

-+++ b/Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt

-@@ -373,7 +373,8 @@ else()

- endif()

- 

- if(GDCM_USE_SYSTEM_OPENJPEG)

--  find_package(OpenJPEG 2.0.0 REQUIRED)

-+  # openjpeg version in vcpkg is already greater than 2.0.0 and openjpeg has no version.cmake file

-+  find_package(OpenJPEG REQUIRED)

-   set(GDCM_OPENJPEG_LIBRARIES ${OPENJPEG_LIBRARIES})

- else()

-   set(GDCM_OPENJPEG_LIBRARIES gdcmopenjp2)

-diff --git a/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg/CMakeLists.txt b/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg/CMakeLists.txt

-index 565cc338..ec126ef9 100644

---- a/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg/CMakeLists.txt

-+++ b/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg/CMakeLists.txt

-@@ -359,12 +359,8 @@ endif()

- 

- #-----------------------------------------------------------------------------

- # pkgconfig support

--# enabled by default on Unix, disabled by default on other platforms

--if(UNIX)

--  option(BUILD_PKGCONFIG_FILES "Build and install pkg-config files" ON)

--else()

--  option(BUILD_PKGCONFIG_FILES "Build and install pkg-config files" OFF)

--endif()

-+# Cannot use the built-in openjp2 because the configuration path is under buildtrees

-+option(BUILD_PKGCONFIG_FILES "Build and install pkg-config files" OFF)

- if(BUILD_PKGCONFIG_FILES)

-   # install in lib and not share (see multi-arch note above)

-   configure_file(${CMAKE_CURRENT_SOURCE_DIR}/src/lib/openjp2/libopenjp2.pc.cmake.in

diff --git a/ports/itk/fix_libminc_config_path.patch b/ports/itk/fix_libminc_config_path.patch
new file mode 100644
index 000000000..3ff305d4b
--- /dev/null
+++ b/ports/itk/fix_libminc_config_path.patch
@@ -0,0 +1,13 @@
+diff --git a/Modules/ThirdParty/MINC/src/libminc/CMakeLists.txt b/Modules/ThirdParty/MINC/src/libminc/CMakeLists.txt
+index 305b2c63..63f81a53 100644
+--- a/Modules/ThirdParty/MINC/src/libminc/CMakeLists.txt
++++ b/Modules/ThirdParty/MINC/src/libminc/CMakeLists.txt
+@@ -550,7 +550,7 @@ IF(LIBMINC_INSTALL_LIB_DIR AND NOT LIBMINC_INSTALL_NO_DEVELOPMENT)
+      ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/Use${LIBMINC_EXTERNAL_LIB_PREFIX}LIBMINC.cmake 
+      ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/${LIBMINC_EXTERNAL_LIB_PREFIX}LIBMINCConfig.cmake
+     DESTINATION 
+-     ${LIBMINC_INSTALL_LIB_DIR}/cmake
++     share/itk
+     COMPONENT Development)
+ ENDIF(LIBMINC_INSTALL_LIB_DIR AND NOT LIBMINC_INSTALL_NO_DEVELOPMENT)
+ 
diff --git a/ports/itk/fix_openjpeg_search.patch b/ports/itk/fix_openjpeg_search.patch
new file mode 100644
index 000000000..d17a1ab84
--- /dev/null
+++ b/ports/itk/fix_openjpeg_search.patch
@@ -0,0 +1,13 @@
+diff --git a/Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt b/Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt
+index 6ac16ab6..4638f13c 100644
+--- a/Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt
++++ b/Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt
+@@ -373,7 +373,7 @@ else()
+ endif()
+ 
+ if(GDCM_USE_SYSTEM_OPENJPEG)
+-  find_package(OpenJPEG 2.0.0 REQUIRED)
++  find_package(OpenJPEG REQUIRED)
+   set(GDCM_OPENJPEG_LIBRARIES ${OPENJPEG_LIBRARIES})
+ else()
+   set(GDCM_OPENJPEG_LIBRARIES gdcmopenjp2)
diff --git a/ports/itk/portfile.cmake b/ports/itk/portfile.cmake
index 77dd88d9d..a83527a51 100644
--- a/ports/itk/portfile.cmake
+++ b/ports/itk/portfile.cmake
@@ -1,8 +1,8 @@
 include(vcpkg_common_functions)
 
 string(LENGTH "${CURRENT_BUILDTREES_DIR}" BUILDTREES_PATH_LENGTH)
-if(BUILDTREES_PATH_LENGTH GREATER 50 AND CMAKE_HOST_WIN32)
-    message(WARNING "ITKs buildsystem uses very long paths and may fail on your system.\n"
+if(BUILDTREES_PATH_LENGTH GREATER 37 AND CMAKE_HOST_WIN32)
+    message(WARNING "${PORT}'s buildsystem uses very long paths and may fail on your system.\n"
         "We recommend moving vcpkg to a short path such as 'C:\\src\\vcpkg' or using the subst command."
     )
 endif()
@@ -10,10 +10,12 @@ endif()
 vcpkg_from_github(
     OUT_SOURCE_PATH SOURCE_PATH
     REPO InsightSoftwareConsortium/ITK
-    REF 3e12e7006a5881136414be54216a35bbacb55baa
-    SHA512 9796429f8750faffc87e44052455740d1a560883e83c3ed9614d1c7ae9cc1ae22a360b572d9bb1c5ec62ca12ac81d3aa0b8dbaffff3e4ad4c2f85077ed04a10b
+    REF v5.0.0
+    SHA512 7eecd62ab3124147f0abce482699dfdc43610703959d4a3f667c8ce12a6ecacf836a863d146f3cc7d5220b4aa05adf70a0d4dc6fa8e87bac215565badc96acff
     HEAD_REF master
-    PATCHES fix_conflict_with_openjp2_pc.patch
+    PATCHES
+        fix_openjpeg_search.patch
+        fix_libminc_config_path.patch
 )
 
 if ("vtk" IN_LIST FEATURES)
@@ -66,12 +68,10 @@ vcpkg_configure_cmake(
 
 vcpkg_install_cmake()
 vcpkg_copy_pdbs()
+vcpkg_fixup_cmake_targets()
 
-vcpkg_fixup_cmake_targets(CONFIG_PATH lib/cmake) # combines release and debug build configurations
 
 file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/share)
 file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include)
 
-# Handle copyright
-file(COPY ${SOURCE_PATH}/LICENSE DESTINATION ${CURRENT_PACKAGES_DIR}/share/itk)
-file(RENAME ${CURRENT_PACKAGES_DIR}/share/itk/LICENSE ${CURRENT_PACKAGES_DIR}/share/itk/copyright)
+file(INSTALL ${SOURCE_PATH}/LICENSE DESTINATION ${CURRENT_PACKAGES_DIR}/share/${PORT} RENAME copyright)