[ITK] Update to 5.1 (#11208)

* [vtk-m] new port vtk-m

* [VTK] Update to 9.0

* include local buildtree changes

* [pcl] disable VTK due to API changes in VTK 9.0

* [vtk-m] add supports field to be only x64

* [vtk-dicom] add python executable.

* fix vtkm dependency

* [vtk-dicom] fix missing std:: namespace

* [vtk-m] add uwp to unsupported triplets

* [vtk] add pegtl include patch, reenable IOMotionFX

* remove hdf5 changes for testing

* use different pgetl patch which redirects to the installed config of pegtl

* [pegtl-2] version file needs renaming too

* [vtk] change dependency to pgetl-2 and fix the patch

* [vtk] put in hdf5 fix again and correct manually installed include files

* remove deprecated function to retrigger CI

* [lz4] correctly lowercase the lz4 config

* [vtk] remove unnecessary code

* [pegtl-2] add homepage

* [pegtl] modernize portfiles

* [vtk-dicom] add homepage

* [vtk-dicom] modernize portfile

* [vtk-m] remove empty build depends

* [vtk] try fixing the permission issue

* [vtk] minimal dependency correction

* [itk] update

* fix portfile errors

* WIP commit

* should make ITK green in VCPKG CI but there a still issues with features

* more dependencies and features....

* remove itk from baseline failure so the check can get green

* more dependency updating.

* minor build fixes

* [openjpeg] Fix dll location

* fix other issues

* add rtkcuda

* [openjpeg] remove default features to make arm and uwp platforms happy

* [itk] more dependency fixes

* [openjpeg] fix no tools case

* [itk] fix wip patch

* [itk] split up patches & cleanup & and move rtk tools if build

* [itk] fix patch and remove old and wip patch

* [nifticlib] Add new port required by minc

* [nifticlib] change repo and add features

* [nifticilib] add zlib dependency & cleanup

* [minc] add new port

* [vcpkg/scripts] add swig to find acquire programm

* [itk/minc] update for external minc

* add supports field for nifticlib

* [itk] make python a default feature for testing

* [itk] cleanup python vars a bit
[vcpkg/scripts] correct swig hash

* [vcpkg/scripts] fix swig

* [itk] fix python include path on unix system

* [itk] remove python as a default. A bit of feature cleanup

* [itk] update remote RTK

* [itk|rtk] remove RTK module before configure to allow patching

* [opencl] update opencl wrapper

* [itk] fix opencl static linkage

* [itk] add cufftw fix

* update baseline

* [itk] fix itk[tbb]

* [itk] update python paths to 3.8

* [itk] add failure messages for unsupported architectures for some features

* [vcpkg_find_acquire_program] update swig to 4.0.2

* Update portfile.cmake

* [itk] move the module removal out of the if for people reusing the old source tree

* [itk] add missing auto_clean to vcpkg_copy_tools

* Update ports/nifticlib/CONTROL

Co-authored-by: Robert Schumacher <roschuma@microsoft.com>

* Update ports/openjpeg/portfile.cmake

Co-authored-by: Robert Schumacher <roschuma@microsoft.com>

* Update scripts/cmake/vcpkg_find_acquire_program.cmake

Co-authored-by: Robert Schumacher <roschuma@microsoft.com>

* [openjpeg] pass OPTIONS to vcpkg_configure_cmake

* [itk] fix typo and leave a todo.

* use sourceforge args for swig

* Update ports/openjpeg/CONTROL

Co-authored-by: Jack·Boos·Yu <47264268+JackBoosY@users.noreply.github.com>

* Update ports/opencl/CONTROL

Co-authored-by: Jack·Boos·Yu <47264268+JackBoosY@users.noreply.github.com>

* [itk] remove debug msgs from patch

* pre-install yasm on OSX

Co-authored-by: Lily <47812810+LilyWangL@users.noreply.github.com>
Co-authored-by: Robert Schumacher <roschuma@microsoft.com>
Co-authored-by: Jack·Boos·Yu <47264268+JackBoosY@users.noreply.github.com>
Co-authored-by: JackBoosY <yuzaiyang@beyondsoft.com>

3 files changed, 89 insertions, 7 deletions

diff --git a/ports/openjpeg/CONTROL b/ports/openjpeg/CONTROL
index 0fd7d64a6..07afd75f1 100644
--- a/ports/openjpeg/CONTROL
+++ b/ports/openjpeg/CONTROL
@@ -1,4 +1,17 @@
 Source: openjpeg
-Version: 2.3.1-1
+Version: 2.3.1
+Port-Version: 2
 Homepage: https://github.com/uclouvain/openjpeg
 Description: JPEG 2000 image library
+
+Feature: jpwl
+Description: Build optional component jpwl
+
+Feature: mj2
+Description: Build optional component mj2
+
+Feature: jpip
+Description: Build optional component jpip
+
+Feature: jp3d
+Description: Build optional component jp3d
diff --git a/ports/openjpeg/dll.location.patch b/ports/openjpeg/dll.location.patch
new file mode 100644
index 000000000..bdc77a542
--- /dev/null
+++ b/ports/openjpeg/dll.location.patch
@@ -0,0 +1,32 @@
+diff --git a/src/lib/openjp3d/CMakeLists.txt b/src/lib/openjp3d/CMakeLists.txt
+index b0469af1f..75048ef13 100644
+--- a/src/lib/openjp3d/CMakeLists.txt	
++++ b/src/lib/openjp3d/CMakeLists.txt
+@@ -34,8 +34,9 @@ endif()
+ # Install library
+ install(TARGETS ${OPENJP3D_LIBRARY_NAME}
+   EXPORT OpenJP3DTargets
+-  DESTINATION ${OPENJPEG_INSTALL_LIB_DIR}
+-  COMPONENT Libraries
++  RUNTIME DESTINATION ${OPENJPEG_INSTALL_BIN_DIR} COMPONENT Applications
++  LIBRARY DESTINATION ${OPENJPEG_INSTALL_LIB_DIR} COMPONENT Libraries
++  ARCHIVE DESTINATION ${OPENJPEG_INSTALL_LIB_DIR} COMPONENT Libraries
+ )
+ 
+ # Install includes files
+diff --git a/src/lib/openmj2/CMakeLists.txt b/src/lib/openmj2/CMakeLists.txt
+index 25294b20e..e3acfe8e7 100644
+--- a/src/lib/openmj2/CMakeLists.txt	
++++ b/src/lib/openmj2/CMakeLists.txt
+@@ -53,8 +53,9 @@ endif()
+ # Install library
+ install(TARGETS ${OPENMJ2_LIBRARY_NAME}
+   EXPORT OpenMJ2Targets
+-  DESTINATION ${OPENJPEG_INSTALL_LIB_DIR}
+-  COMPONENT Libraries
++  RUNTIME DESTINATION ${OPENJPEG_INSTALL_BIN_DIR} COMPONENT Applications
++  LIBRARY DESTINATION ${OPENJPEG_INSTALL_LIB_DIR} COMPONENT Libraries
++  ARCHIVE DESTINATION ${OPENJPEG_INSTALL_LIB_DIR} COMPONENT Libraries
+ )
+ 
+ # Install includes files
diff --git a/ports/openjpeg/portfile.cmake b/ports/openjpeg/portfile.cmake
index 2296734ad..c6d854490 100644
--- a/ports/openjpeg/portfile.cmake
+++ b/ports/openjpeg/portfile.cmake
@@ -1,27 +1,65 @@
-include(vcpkg_common_functions)
-
 vcpkg_from_github(
     OUT_SOURCE_PATH SOURCE_PATH
     REPO uclouvain/openjpeg
     REF v2.3.1
     SHA512 339fbc899bddf2393d214df71ed5d6070a3a76b933b1e75576c8a0ae9dfcc4adec40bdc544f599e4b8d0bc173e4e9e7352408497b5b3c9356985605830c26c03
     HEAD_REF master
+    PATCHES dll.location.patch
 )
 
+if(VCPKG_LIBRARY_LINKAGE STREQUAL "static")
+    list(APPEND OPTIONS "-DBUILD_SHARED_LIBS=OFF"
+                        "-DBUILD_STATIC_LIBS=ON")
+else()
+    list(APPEND OPTIONS "-DBUILD_SHARED_LIBS=ON"
+                        "-DBUILD_STATIC_LIBS=OFF")
+endif()
+
+vcpkg_check_features(OUT_FEATURE_OPTIONS FEATURE_OPTIONS
+    "jpwl"          BUILD_JPWL
+    "mj2"           BUILD_MJ2
+    "jpip"          BUILD_JPIP
+    "jp3d"          BUILD_JP3D
+    )
+
 vcpkg_configure_cmake(
     SOURCE_PATH ${SOURCE_PATH}
     PREFER_NINJA
     OPTIONS -DBUILD_CODEC:BOOL=OFF
+            -DBUILD_DOC:BOOL=OFF
             -DOPENJPEG_INSTALL_PACKAGE_DIR=share/openjpeg
             -DOPENJPEG_INSTALL_INCLUDE_DIR=include
+            -DEXECUTABLE_OUTPUT_PATH=tools/${PORT}
+            -DBUILD_PKGCONFIG_FILES=ON
+            ${FEATURE_OPTIONS}
+            ${OPTIONS}
 )
 
 vcpkg_install_cmake()
+vcpkg_fixup_cmake_targets()
+if(VCPKG_TARGET_IS_WINDOWS)
+    # TODO: remove -lm from *.pc files
+endif()
+vcpkg_fixup_pkgconfig(SYSTEM_LIBRARIES m)
 
 file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include)
 
-vcpkg_fixup_cmake_targets()
-
+set(TOOL_NAMES)
+if("jpwl" IN_LIST FEATURES)
+    list(APPEND TOOL_NAMES  opj_dec_server opj_jpwl_compress opj_jpwl_decompress)
+endif()  
+if("mj2" IN_LIST FEATURES)
+    list(APPEND TOOL_NAMES opj_compress opj_decompress opj_dump opj_mj2_compress opj_mj2_decompress opj_mj2_extract opj_mj2_wrap)
+endif()  
+if("jpip" IN_LIST FEATURES)
+    list(APPEND TOOL_NAMES opj_jpip_addxml opj_jpip_test opj_jpip_transcode)
+endif()
+if("jp3d" IN_LIST FEATURES)
+    list(APPEND TOOL_NAMES opj_jp3d_compress opj_jp3d_decompress)
+endif()
+if(TOOL_NAMES)
+    vcpkg_copy_tools(TOOL_NAMES ${TOOL_NAMES} AUTO_CLEAN)
+endif()
 file(READ ${CURRENT_PACKAGES_DIR}/include/openjpeg.h OPENJPEG_H)
 if(VCPKG_LIBRARY_LINKAGE STREQUAL "static")
     string(REPLACE "defined(OPJ_STATIC)" "1" OPENJPEG_H "${OPENJPEG_H}")
@@ -32,7 +70,6 @@ string(REPLACE "defined(DLL_EXPORT)" "0" OPENJPEG_H "${OPENJPEG_H}")
 file(WRITE ${CURRENT_PACKAGES_DIR}/include/openjpeg.h "${OPENJPEG_H}")
 
 # Handle copyright
-file(COPY ${SOURCE_PATH}/LICENSE DESTINATION ${CURRENT_PACKAGES_DIR}/share/openjpeg)
-file(RENAME ${CURRENT_PACKAGES_DIR}/share/openjpeg/LICENSE ${CURRENT_PACKAGES_DIR}/share/openjpeg/copyright)
+file(INSTALL "${SOURCE_PATH}/LICENSE" DESTINATION "${CURRENT_PACKAGES_DIR}/share/${PORT}" RENAME copyright)
 
 vcpkg_copy_pdbs()